Inferring chemical reaction patterns using rule composition in graph grammars Jakob L Andersen, Christoph Flamm, Daniel Merkle, Peter F Stadler J Sys Chem 4:4 (2013), doi:10.1186/1759-2208-4-4 |
A graph-based toy model of chemistry
Gil Benkö, Christoph Flamm, Peter F Stadler
In Journal of Chemical Information and Computer Sciences, 2003, 43, 4, 1085-1093
doi:10.1021/ci0200570 bibtex |
Evolution of metabolic networks: a computational framework
Christoph Flamm, Alexander Ullrich, Heinz Ekker, Martin Mann, Daniel Högerl, Markus Rohrschneider, Sebastian Sauer, Gerik Scheuermann, Konstantin Klemm, Ivo L Hofacker, Peter F Stadler
In Journal of Systems Chemistry, 2010, 1, 1, 1-14
doi:10.1186/1759-2208-1-4 bibtex |
The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks
Rainer Machné, Andrew Finney, Stefan Müller, James Lu, Stefanie Widder, Christoph Flamm
In Bioinformatics, 2006, 22, 11, 1406-1407
doi:10.1093/bioinformatics/btl086 bibtex |